Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs2272312 | chr12:49319270 | C/T | 9.88E-5 | 485 | 16.67 | 16.05 | 13.93 | KM Plot |
| THCA | rs2273606 | chr6:24405357 | A/G | 4.55E-15 | 490 | 16.48 | 14.78 | 12.9 | KM Plot |
| THCA | rs2275198 | chr1:156906881 | G/A | 5.29E-7 | 488 | 16.67 | 14.87 | 11.3 | KM Plot |
| THCA | rs2275199 | chr1:156909695 | G/A | 5.43E-7 | 487 | 16.73 | 14.87 | 11.3 | KM Plot |
| THCA | rs2275200 | chr1:156911379 | A/G | 4.3E-6 | 478 | 16.57 | 15.67 | 11.48 | KM Plot |
| THCA | rs2275204 | chr1:156925435 | T/C | 1.96E-6 | 488 | 16.6 | 15.68 | 11.48 | KM Plot |
| THCA | rs2276889 | chr4:39460413 | C/A | 4.44E-15 | 489 | 15.9 | 17.38 | 6.1 | KM Plot |
| THCA | rs2276891 | chr4:39482440 | G/A | 4.44E-15 | 489 | 15.9 | 17.63 | 6.1 | KM Plot |
| THCA | rs2276893 | chr4:39482627 | T/C | 4.44E-15 | 489 | 15.9 | 17.63 | 6.1 | KM Plot |
| THCA | rs2282538 | chr11:62599732 | C/T | 7.89E-5 | 490 | 16.23 | 14.17 | 14.27 | KM Plot |
| THCA | rs2284451 | chr11:4155132 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs2285833 | chr16:20841707 | G/A | 4.84E-5 | 489 | 16.38 | 14.67 | 17.47 | KM Plot |
| THCA | rs2289574 | chr11:62602137 | T/C | 7.55E-5 | 490 | 16.22 | 14.33 | 14.27 | KM Plot |
| THCA | rs2297469 | chr6:167579918 | A/G | 0.000212 | 490 | 16.22 | 14.9 | 12.72 | KM Plot |
| THCA | rs2297470 | chr6:167579677 | G/T | 0.000212 | 490 | 12.72 | 14.9 | 16.22 | KM Plot |